Webb16 sep. 2024 · Our aim is to use STAR generated BAM both for STAR-Fusion and Arriba, as the latter requires to have chimeric reads in the BAM. We noticed that STAR-Fusion ran … Webb4 feb. 2024 · chimOutType WithinBAM -> SeparateSAMold #1474. Open. andrea-de-micheli opened this issue on Feb 4 · 4 comments.
Input files - Arriba - Read the Docs
Webb9 maj 2024 · Check with the STAR group. I know there was interest in making this work, but I'm not sure if it's in the latest STAR code. … On Sat, May 9, 2024 at 12:17 PM Zhichao … Webb3 jan. 2024 · Running starccm+: To open starccm+ in GUI mode execute the following three lines in your shell. or execute the script file run_star.sh like “./run_star.sh &”. Make sure … how many submarines ukraine have
STAR-Fusion failed to run different STAR junction file ... - Github
WebbDetection of chimeric reads must be enabled in STAR by specifying the parameter --chimSegmentMin. In addition, the parameter --chimOutType WithinBAM must be … WebbNote. More information about these inputs are available below. Generate user input files for star_alignReads: # user inputs janis inputs star_alignReads > inputs.yaml. inputs.yaml. {} … WebbSTAR-CCM+ is only available on the CC software stack. Note that the default CC StdEnv changed since Apr/01/2024. On Niagara you must run the following module commands: … how did the walking dead outbreak start